TSS: Rfhg 130884.1: Difference between revisions

Latest revision as of 20:37, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_130884.1
Species:	human
Chr:	chr10

Start:	119271233
End:	119271246
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2398352,EH38E1504266)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	63668
Nearest PromoterID:	NM_005308
Entrez ID:	2869
Nearest Unigene:	Hs.524625
Nearest Refseq:	NM_005308
Nearest Ensembl:	ENSG00000198873
Gene Name:
Gene Alias:	FP2025\|GPRK5
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.428571
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_005308, intron 1 of 15)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=G protein-coupled receptor kinase 5
 |gene_id=
-|gene_name=GRK5
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_005308
 |nearest_refseq=NM_005308
+|nearest_transcripts=
 |nearest_unigene=Hs.524625
 |peak_score=1