TSS: Rfhg 134769.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000379472.4:0 ENST00000675775.1:0 ENST00000265969.8:0 ENST00000640909.2:0 ENST00000640318.2:0 ENST00000639325.2:0 NM_001112741.2:0 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=potassium voltage-gated channel subfamily C member 1 | |gene_description=potassium voltage-gated channel subfamily C member 1 | ||
|gene_id=3746 | |gene_id=3746 | ||
|gene_name= | |gene_name=potassium voltage-gated channel subfamily C member 1 | ||
|gene_source=HGNC:6233 | |gene_source=HGNC:6233 | ||
|gene_symbol=KCNC1 | |gene_symbol=KCNC1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_004976 | |nearest_promoter_id=NM_004976 | ||
|nearest_refseq=NM_004976 | |nearest_refseq=NM_004976 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.552896 | |nearest_unigene=Hs.552896 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 21:52, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2428625,EH38E1524863) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1172 |
|---|---|
| Nearest PromoterID: | NM_004976 |
| Entrez ID: | 3746 |
| Nearest Unigene: | Hs.552896 |
| Nearest Refseq: | NM_004976 |
| Nearest Ensembl: | ENSG00000129159 |
| Gene Name: | potassium voltage-gated channel subfamily C member 1 |
| Gene Alias: | EPM7|KV3.1|KV4|NGK2 |
| Gene Type: | protein-coding |
| CpG%: | 0.206897 |
| GC%: | 0.784091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.