TSS: Rfhg 13773.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AK023354:0 BC063841:0 AK098368:0 BC018403:0 AK302895:0 AK314413:0 AF188240:4 AB587408:11 AB209566:15 ENST00000472638.1:63 ENST00000368309.4:-66 NM_020131.5:-66 NM_001304342.2:-66
|annotation=promoter-TSS (NM_020131)
|annotation=promoter-TSS (NM_020131)
|ccre_category=N
|ccre_category=N
Line 15: Line 16:
|gene_description=ubiquilin 4
|gene_description=ubiquilin 4
|gene_id=56893
|gene_id=56893
|gene_name=UBQLN4
|gene_name=ubiquilin 4
|gene_source=HGNC:1237
|gene_source=HGNC:1237
|gene_symbol=UBQLN4
|gene_symbol=UBQLN4
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|nearest_promoter_id=NM_020131
|nearest_promoter_id=NM_020131
|nearest_refseq=NM_020131
|nearest_refseq=NM_020131
|nearest_transcripts=AF188240:4 AB587408:11 AB209566:15 ENST00000472638.1:63 ENST00000368309.4:-66 NM_020131.5:-66 NM_001304342.2:-66
|nearest_unigene=Hs.283739
|nearest_unigene=Hs.283739
|peak_score=1
|peak_score=1

Latest revision as of 22:50, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_13773.1
Species:human
Chr:chr1
Start:156053713
End:156053732
Strand:-
Source datasetsEPD|DRA000914
ProtocolTSS_database|CAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC063841:0
AK098368:0
BC018403:0
AK302895:0
AK314413:0
GeneID:56893
HGNC/MGI_ID:HGNC:1237
UniProt_ID:B4DZF6
Nearer transcript ids and distances:
  • AF188240:4
  • AB587408:11
  • AB209566:15
  • ENST00000472638.1:63
  • ENST00000368309.4:-66
  • NM_020131.5:-66
  • NM_001304342.2:-66
view more...
Gene_name:ubiquilin 4
Gene_symbol:UBQLN4
Gene_synonyms:A1U UBIN
Gene_source:HGNC:1237



TATA-Box annotation

Distance to TSS:76
Nearest PromoterID:NM_020131
Entrez ID:56893
Nearest Unigene:Hs.283739
Nearest Refseq:NM_020131
Nearest Ensembl:ENSG00000160803
Gene Name:ubiquilin 4
Gene Alias:A1U|A1Up|C1orf6|CIP75|UBIN
Gene Type:protein-coding
CpG%:0.157895
GC%:0.900000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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