TSS: Rfhg 140712.1: Difference between revisions

Latest revision as of 23:49, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_140712.1
Species:	human
Chr:	chr11

Start:	72216775
End:	72216801
Strand:	+

Source datasets

FANTOM5|EPD|ENCODE

Protocol

CAGE|TSS_database

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000619261.4:0 ENST00000454954.6:0 ENST00000541003.5:0 ENST00000539412.5:0 ENST00000298223.11:0 ENST00000536778.5:0 AK222539:0 AK222643:0 BC058036:0
GeneID:	2350
HGNC/MGI_ID:	HGNC:3793
UniProt_ID:	A0A087WWY2 F5GZ45 F5H3Z4 F5H5L8 J3KR13 P14207 Q53HP1
Nearer transcript ids and distances:	BC027894:5 ENST00000535625.5:25 ENST00000321324.11:30 J02876:32 EU832730:98 EU832652:98 ENST00000449475.6:-174 view more...

Gene_name:	folate receptor beta
Gene_symbol:	FOLR2
Gene_synonyms:	FRβ
Gene_source:	HGNC:3793

TATA-Box annotation

Distance to TSS:	-6
Nearest PromoterID:	NM_001113534
Entrez ID:	2350
Nearest Unigene:	Hs.433159
Nearest Refseq:	NM_000803
Nearest Ensembl:	ENSG00000165457
Gene Name:	folate receptor beta
Gene Alias:	BETA-HFR\|FBP\|FBP/PL-1\|FR-BETA\|FR-P3\|FRbeta
Gene Type:	protein-coding
CpG%:	0.076923
GC%:	0.518519
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000619261.4:0 ENST00000454954.6:0 ENST00000541003.5:0 ENST00000539412.5:0 ENST00000298223.11:0 ENST00000536778.5:0 NM_001113536.2:0 NM_001113534.2:0 NM_001113535.2:0 NM_000803.5:0 AK222539:0 AK222643:0 BC058036:0 AF000380:0 BC027894:5 ENST00000535625.5:25 ENST00000321324.11:30 J02876:32 EU832730:98 EU832652:98 ENST00000449475.6:-174
 |annotation=promoter-TSS (NM_001113536)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=folate receptor beta
 |gene_id=2350
-|gene_name=FOLR2
+|gene_name=folate receptor beta
 |gene_source=HGNC:3793
 |gene_symbol=FOLR2
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001113534
 |nearest_refseq=NM_000803
+|nearest_transcripts=BC027894:5 ENST00000535625.5:25 ENST00000321324.11:30 J02876:32 EU832730:98 EU832652:98 ENST00000449475.6:-174
 |nearest_unigene=Hs.433159
 |peak_score=1