TSS: Mm 125998.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK013456:0 ENSMUST00000043089.7:-9 NM_198885:-9 uc007wkg.2:-9 S78079:-9 BC062161:56 AB221642:138 |chr=chr15 |cpg_percent=0.085 |distance=0 |distance_to_...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |Bhlha41= | ||
|Scl= | |||
|all_trans=MGI:102934 | |||
|chr=chr15 | |chr=chr15 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
|end=76457464 | |end=76457464 | ||
|end_of_center_position=76457456 | |||
|entrez_id=20289 | |entrez_id=20289 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=BB114693 | |gene_alias=BB114693{{!}}Bhlha41{{!}}Scl | ||
|gene_description=scleraxis | |gene_description=scleraxis | ||
|gene_id=20289 | |gene_id=20289 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_198885 | |nearest_refseq=NM_198885 | ||
|nearest_unigene=Mm.322821 | |nearest_unigene=Mm.322821 | ||
|num_trans= | |num_trans=20289 | ||
|species=mouse | |species=mouse | ||
|start=76457446 | |start=76457446 | ||
|start_of_center_position=76457455 | |||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box=-77(GGCCAGAAAGGG,-,0.00),-33(TGCTATAAAGGC,-,0.00) | ||
|transcript_name=AK013456 | |transcript_name=ENSMUST00000229271.1 AK013456 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_125998.1 | |tss_id=mm_125998.1 | ||
Latest revision as of 19:58, 26 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17 |
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| Nearest PromoterID: | NM_198885 |
| Entrez ID: | 20289 |
| Nearest Unigene: | Mm.322821 |
| Nearest Refseq: | NM_198885 |
| Nearest Ensembl: | ENSMUSG00000034161 |
| Gene Name: | scleraxis |
| Gene Alias: | BB114693|Bhlha41|Scl |
| Gene Description: | scleraxis |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -77(GGCCAGAAAGGG,-,0.00),-33(TGCTATAAAGGC,-,0.00) |
TSS expression
Expression data not found.