TSS: Rfhg 141081.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001367861.1:-15 NM_001367863.1:-15 NM_001367865.1:-15 NM_001367860.1:-15 ENST00000529024.1:18 AB008185:18 AK022450:231 ENST00000526068.1:245 ENST00000294064.9:253 NM_001367867.2:253 NM_001367862.1:253 NM_001367864.1:253 NM_006656.6:253 NM_001367866.1:253 ENST00000532963.1:254 ENST00000531619.1:263 AK290442:263 ENST00000534628.1:264 AK303540:265 ENST00000531509.5:-380 BC136397:-380 BC144059:-380 | |||
|annotation=promoter-TSS (NM_001367864) | |annotation=promoter-TSS (NM_001367864) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=neuraminidase 3 | |gene_description=neuraminidase 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001367863 | |nearest_promoter_id=NM_001367863 | ||
|nearest_refseq=NM_006656 | |nearest_refseq=NM_006656 | ||
|nearest_transcripts=ENST00000529024.1:18 AB008185:18 AK022450:231 ENST00000526068.1:245 ENST00000294064.9:253 NM_001367867.2:253 NM_001367862.1:253 NM_001367864.1:253 NM_006656.6:253 NM_001367866.1:253 ENST00000532963.1:254 ENST00000531619.1:263 AK290442:263 ENST00000534628.1:264 AK303540:265 ENST00000531509.5:-380 BC136397:-380 BC144059:-380 | |||
|nearest_unigene=Hs.191074 | |nearest_unigene=Hs.191074 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 23:57, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2469830,EH38E1552761) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NM_001367863 |
| Entrez ID: | 10825 |
| Nearest Unigene: | Hs.191074 |
| Nearest Refseq: | NM_006656 |
| Nearest Ensembl: | ENSG00000162139 |
| Gene Name: | |
| Gene Alias: | SIAL3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.409091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000529024.1:18 AB008185:18 AK022450:231 ENST00000526068.1:245 ENST00000294064.9:253 NM_001367867.2:253 NM_001367862.1:253 NM_001367864.1:253 NM_006656.6:253 NM_001367866.1:253 ENST00000532963.1:254 ENST00000531619.1:263 AK290442:263 ENST00000534628.1:264 AK303540:265 ENST00000531509.5:-380 BC136397:-380 BC144059:-380" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.