TSS: Rfhg 142218.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=promoter-TSS (NR_135093) | |annotation=promoter-TSS (NR_135093) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=uncharacterized LOC105369438 | |gene_description=uncharacterized LOC105369438 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_135096 | |nearest_promoter_id=NR_135096 | ||
|nearest_refseq=NR_135093 | |nearest_refseq=NR_135093 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.568921 | |nearest_unigene=Hs.568921 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 00:18, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2484803,EH38E1562093) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -202 |
|---|---|
| Nearest PromoterID: | NR_135096 |
| Entrez ID: | 105369438 |
| Nearest Unigene: | Hs.568921 |
| Nearest Refseq: | NR_135093 |
| Nearest Ensembl: | ENSG00000255929 |
| Gene Name: | |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.190476 |
| GC%: | 0.744186 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |