TSS: Rfhg 143876.1: Difference between revisions

Latest revision as of 00:51, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_143876.1
Species:	human
Chr:	chr11

Start:	118530636
End:	118530692
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2503548,EH38E1574231)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001346098.2:-219
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000411589.6:349 ENST00000359862.8:396 ENST00000442938.6:396 ENST00000526941.1:483 AK075437:497 ENST00000527785.1:500 ENST00000525118.5:500 ENST00000534181.5:500 ENST00000528373.5:500 ENST00000313236.10:500 NM_001144035.2:500 NM_001144036.2:500 NM_001318757.2:500 NM_001144034.2:500 NM_001318755.2:500 NM_032780.4:500 NM_001144038.2:500 NM_001144037.2:500 NR_134852.2:500 AK293670:500 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	111
Nearest PromoterID:	NR_120575
Entrez ID:	101929089
Nearest Unigene:	Hs.666633
Nearest Refseq:	NR_120572
Nearest Ensembl:	ENSG00000255435
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.142857
GC%:	0.719298
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "ENST00000411589.6:349 ENST00000359862.8:396 ENST00000442938.6:396 ENST00000526941.1:483 AK075437:497 ENST00000527785.1:500 ENST00000525118.5:500 ENST00000534181.5:500 ENST00000528373.5:500 ENST00000313236.10:500 NM_001144035.2:500 NM_001144036.2:500 NM_001318757.2:500 NM_001144034.2:500 NM_001318755.2:500 NM_032780.4:500 NM_001144038.2:500 NM_001144037.2:500 NR_134852.2:500 AK293670:500" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001346098.2:-219 ENST00000411589.6:349 ENST00000359862.8:396 ENST00000442938.6:396 ENST00000526941.1:483 AK075437:497 ENST00000527785.1:500 ENST00000525118.5:500 ENST00000534181.5:500 ENST00000528373.5:500 ENST00000313236.10:500 NM_001144035.2:500 NM_001144036.2:500 NM_001318757.2:500 NM_001144034.2:500 NM_001318755.2:500 NM_032780.4:500 NM_001144038.2:500 NM_001144037.2:500 NR_134852.2:500 AK293670:500
 |annotation=promoter-TSS (NM_032780)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC101929089
 |gene_id=
-|gene_name=LOC101929089
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_120575
 |nearest_refseq=NR_120572
+|nearest_transcripts=ENST00000411589.6:349 ENST00000359862.8:396 ENST00000442938.6:396 ENST00000526941.1:483 AK075437:497 ENST00000527785.1:500 ENST00000525118.5:500 ENST00000534181.5:500 ENST00000528373.5:500 ENST00000313236.10:500 NM_001144035.2:500 NM_001144036.2:500 NM_001318757.2:500 NM_001144034.2:500 NM_001318755.2:500 NM_032780.4:500 NM_001144038.2:500 NM_001144037.2:500 NR_134852.2:500 AK293670:500
 |nearest_unigene=Hs.666633
 |peak_score=1