TSS: Rfhg 145670.1: Difference between revisions

Latest revision as of 01:26, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_145670.1
Species:	human
Chr:	chr12

Start:	1500494
End:	1500498
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2520652,EH38E1586185)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_028415.1:-3
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000515614.3:27 AK090616:27 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	5
Nearest PromoterID:	NR_028415
Entrez ID:	100292680
Nearest Unigene:	Hs.391695
Nearest Refseq:	NR_028415
Nearest Ensembl:	ENSG00000249628
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_028415.1:-3 ENST00000515614.3:27 AK090616:27
 |annotation=promoter-TSS (NR_028415)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=long intergenic non-protein coding RNA 942
 |gene_id=
-|gene_name=LINC00942
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_028415
 |nearest_refseq=NR_028415
+|nearest_transcripts=ENST00000515614.3:27 AK090616:27
 |nearest_unigene=Hs.391695
 |peak_score=1