TSS: Rfhg 146574.1: Difference between revisions

Latest revision as of 01:44, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_146574.1
Species:	human
Chr:	chr12

Start:	6938070
End:	6938086
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2526492,EH38E1590458)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	MN309531:-430
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-5360
Nearest PromoterID:	NM_001301836
Entrez ID:	113246
Nearest Unigene:	Hs.405913
Nearest Refseq:	NM_138425
Nearest Ensembl:	ENSG00000111678
Gene Name:
Gene Alias:	C10\|GRCC10
Gene Type:	protein-coding
CpG%:	0.062500
GC%:	0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=MN309531:-430
 |annotation=intron (NM_001940, intron 6 of 9)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=chromosome 12 open reading frame 57
 |gene_id=
-|gene_name=C12orf57
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001301836
 |nearest_refseq=NM_138425
+|nearest_transcripts=
 |nearest_unigene=Hs.405913
 |peak_score=1