TSS: Rfhg 148103.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF207446:45 MA443023:45 ENST00000542276.1:64 L20688:123 ENST00000541546.5:187 ENST00000228945.9:191 NM_001321420.2:191 NM_001175.7:191 AK311807:193 L07916:194 ENST00000535676.1:201 X69549:214 BC009200:218 | |||
|annotation=promoter-TSS (NM_001175) | |annotation=promoter-TSS (NM_001175) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=Rho GDP dissociation inhibitor beta | |gene_description=Rho GDP dissociation inhibitor beta | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001321420 | |nearest_promoter_id=NM_001321420 | ||
|nearest_refseq=NM_001175 | |nearest_refseq=NM_001175 | ||
|nearest_transcripts=ENST00000542276.1:64 L20688:123 ENST00000541546.5:187 ENST00000228945.9:191 NM_001321420.2:191 NM_001175.7:191 AK311807:193 L07916:194 ENST00000535676.1:201 X69549:214 BC009200:218 | |||
|nearest_unigene=Hs.504877 | |nearest_unigene=Hs.504877 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 02:13, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2533049,EH38E1595230) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -193 |
|---|---|
| Nearest PromoterID: | NM_001321420 |
| Entrez ID: | 397 |
| Nearest Unigene: | Hs.504877 |
| Nearest Refseq: | NM_001175 |
| Nearest Ensembl: | ENSG00000111348 |
| Gene Name: | |
| Gene Alias: | D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.400000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |