TSS: Rfhg 149032.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=intron (NM_001271783, intron 1 of 11) | |annotation=intron (NM_001271783, intron 1 of 11) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=fatty acyl-CoA reductase 2 | |gene_description=fatty acyl-CoA reductase 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001271783 | |nearest_promoter_id=NM_001271783 | ||
|nearest_refseq=NM_018099 | |nearest_refseq=NM_018099 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.684482 | |nearest_unigene=Hs.684482 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 02:31, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2543644,EH38E1602021) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 10493 |
|---|---|
| Nearest PromoterID: | NM_001271783 |
| Entrez ID: | 55711 |
| Nearest Unigene: | Hs.684482 |
| Nearest Refseq: | NM_018099 |
| Nearest Ensembl: | ENSG00000064763 |
| Gene Name: | |
| Gene Alias: | HEL-S-81|MLSTD1|SDR10E2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.307692 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |