TSS: Rfhg 153649.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NR_026837.1:46 NR_026836.1:46 ENST00000663992.1:48 ENST00000653894.1:48 ENST00000656147.1:54 BC040230:71 ENST00000668395.1:73 ENST00000659498.1:-278 ENST00000665830.1:-318 ENST00000663541.1:458 ENST00000658779.1:462 | |||
|annotation=promoter-TSS (NR_026837) | |annotation=promoter-TSS (NR_026837) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=TRHDE antisense RNA 1 | |gene_description=TRHDE antisense RNA 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_026837 | |nearest_promoter_id=NR_026837 | ||
|nearest_refseq=NM_001025457 | |nearest_refseq=NM_001025457 | ||
|nearest_transcripts=ENST00000663992.1:48 ENST00000653894.1:48 ENST00000656147.1:54 BC040230:71 ENST00000668395.1:73 ENST00000659498.1:-278 ENST00000665830.1:-318 ENST00000663541.1:458 ENST00000658779.1:462 | |||
|nearest_unigene=Hs.363603 | |nearest_unigene=Hs.363603 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 04:01, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2576621,EH38E1624410) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NR_026837 |
| Entrez ID: | 283392 |
| Nearest Unigene: | Hs.363603 |
| Nearest Refseq: | NM_001025457 |
| Nearest Ensembl: | ENSG00000236333 |
| Gene Name: | |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |