TSS: Rfhg 153882.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000416496.6:0 ENST00000322886.12:0 ENST00000550669.5:0 ENST00000551558.1:0 ENST00000547316.1:0 NM_203394.3:0 BC017481:0 BC136366:108 BC136367:108 | |||
|annotation=promoter-TSS (NM_203394) | |annotation=promoter-TSS (NM_203394) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=E2F transcription factor 7 | |gene_description=E2F transcription factor 7 | ||
|gene_id=144455 | |gene_id=144455 | ||
|gene_name= | |gene_name=E2F transcription factor 7 | ||
|gene_source=HGNC:23820 | |gene_source=HGNC:23820 | ||
|gene_symbol=E2F7 | |gene_symbol=E2F7 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_203394 | |nearest_promoter_id=NM_203394 | ||
|nearest_refseq=NM_203394 | |nearest_refseq=NM_203394 | ||
|nearest_transcripts=BC136366:108 BC136367:108 | |||
|nearest_unigene=Hs.416375 | |nearest_unigene=Hs.416375 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 04:05, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|PRJNA4843412|DRA013844|PRJNA548673|PRJNA401781 |PRJNA615891|PRJNA597322 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|NETCAGE|SLIC_CAGE|ReCappable-seq |STRIPE-seq | |||||||||||||||
| TSS cluster detected* | 9 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2579757,EH38E1626320) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_203394 |
| Entrez ID: | 144455 |
| Nearest Unigene: | Hs.416375 |
| Nearest Refseq: | NM_203394 |
| Nearest Ensembl: | ENSG00000165891 |
| Gene Name: | E2F transcription factor 7 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.101695 |
| GC%: | 0.650000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.