TSS: Rfhg 156049.1: Difference between revisions

Latest revision as of 04:46, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_156049.1
Species:	human
Chr:	chr12

Start:	108635843
End:	108635856
Strand:	+

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2604627,EH38E1642359)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000547282.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000635896.1:-33 NR_039717.1:-33 LG052716:-33 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	39
Nearest PromoterID:	NR_039717
Entrez ID:	100616240
Nearest Unigene:
Nearest Refseq:	NR_039717
Nearest Ensembl:	ENSG00000284388
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.357143
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000547282.1:0 ENST00000635896.1:-33 NR_039717.1:-33 LG052716:-33
 |annotation=promoter-TSS (NR_039717)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=microRNA 4496
 |gene_id=
-|gene_name=MIR4496
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_039717
 |nearest_refseq=NR_039717
+|nearest_transcripts=ENST00000635896.1:-33 NR_039717.1:-33 LG052716:-33
 |nearest_unigene=
 |peak_score=1