TSS: Rfhg 160514.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000474415.1:-116 | |||
|annotation=intron (NM_000321, intron 2 of 26) | |annotation=intron (NM_000321, intron 2 of 26) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=RB transcriptional corepressor 1 | |gene_description=RB transcriptional corepressor 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=protein phosphatase 1 regulatory subunit 26 pseudogene 1 | ||
|gene_source=HGNC:42015 | |gene_source=HGNC:42015 | ||
|gene_symbol=PPP1R26P1 | |gene_symbol=PPP1R26P1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_000321 | |nearest_promoter_id=NM_000321 | ||
|nearest_refseq=NM_000321 | |nearest_refseq=NM_000321 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.408528 | |nearest_unigene=Hs.408528 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 06:10, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D2652138,EH38E1675079) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16612 |
|---|---|
| Nearest PromoterID: | NM_000321 |
| Entrez ID: | 5925 |
| Nearest Unigene: | Hs.408528 |
| Nearest Refseq: | NM_000321 |
| Nearest Ensembl: | ENSG00000139687 |
| Gene Name: | protein phosphatase 1 regulatory subunit 26 pseudogene 1 |
| Gene Alias: | OSRC|PPP1R130|RB|p105-Rb|pRb|pp110 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.