TSS: Rfhg 161874.1: Difference between revisions

Latest revision as of 06:35, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_161874.1
Species:	human
Chr:	chr13

Start:	94713462
End:	94713480
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2679980,EH38E1689658)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF210203:0 MA445780:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF335644:16 MA571221:16 NR_158368.1:19 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-28
Nearest PromoterID:	NR_158368
Entrez ID:	112268114
Nearest Unigene:	Hs.741900
Nearest Refseq:	NR_158368
Nearest Ensembl:
Gene Name:
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.526316
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF210203:0 MA445780:0 LF335644:16 MA571221:16 NR_158368.1:19
 |annotation=promoter-TSS (NR_158368)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC112268114
 |gene_id=
-|gene_name=LOC112268114
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_158368
 |nearest_refseq=NR_158368
+|nearest_transcripts=LF335644:16 MA571221:16 NR_158368.1:19
 |nearest_unigene=Hs.741900
 |peak_score=1