TSS: Rfhg 16307.1: Difference between revisions

Latest revision as of 06:57, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_16307.1
Species:	human
Chr:	chr1

Start:	177351576
End:	177351585
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2244299,EH38E1400252)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000666721.1:0
GeneID:
HGNC/MGI_ID:	HGNC:52432
UniProt_ID:
Nearer transcript ids and distances:	NR_126001.1:1 ENST00000451341.2:-12 ENST00000659805.1:-14 view more...

Gene_name:	long intergenic non-protein coding RNA 1645
Gene_symbol:	LINC01645
Gene_synonyms:
Gene_source:	HGNC:52432

TATA-Box annotation

Distance to TSS:	-6
Nearest PromoterID:	NR_126001
Entrez ID:	102724661
Nearest Unigene:	Hs.146628
Nearest Refseq:	NR_126001
Nearest Ensembl:
Gene Name:	long intergenic non-protein coding RNA 1645
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.700000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000666721.1:0 NR_126001.1:1 ENST00000451341.2:-12 ENST00000659805.1:-14
 |annotation=promoter-TSS (NR_126001)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=long intergenic non-protein coding RNA 1645
 |gene_id=
-|gene_name=LINC01645
+|gene_name=long intergenic non-protein coding RNA 1645
 |gene_source=HGNC:52432
 |gene_symbol=LINC01645
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_126001
 |nearest_refseq=NR_126001
+|nearest_transcripts=NR_126001.1:1 ENST00000451341.2:-12 ENST00000659805.1:-14
 |nearest_unigene=Hs.146628
 |peak_score=1