TSS: Rfhg 163522.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=intron (NM_031314, intron 1 of 8) | |annotation=intron (NM_031314, intron 1 of 8) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
| Line 15: | Line 16: | ||
|gene_description=heterogeneous nuclear ribonucleoprotein C (C1/C2) | |gene_description=heterogeneous nuclear ribonucleoprotein C (C1/C2) | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_031314 | |nearest_promoter_id=NM_031314 | ||
|nearest_refseq=NM_004500 | |nearest_refseq=NM_004500 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.508848 | |nearest_unigene=Hs.508848 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 07:06, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D2698361,EH38E1701573) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 6084 |
|---|---|
| Nearest PromoterID: | NM_031314 |
| Entrez ID: | 3183 |
| Nearest Unigene: | Hs.508848 |
| Nearest Refseq: | NM_004500 |
| Nearest Ensembl: | ENSG00000092199 |
| Gene Name: | |
| Gene Alias: | C1|C2|HNRNP|HNRPC|SNRPC |
| Gene Type: | protein-coding |
| CpG%: | 0.027778 |
| GC%: | 0.405405 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |