TSS: Rfhg 1638.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF357340:-31 MA592917:-31 ENST00000376592.6:63 ENST00000376585.6:63 ENST00000431243.6:63 AY046561:63 AY046562:63 AY046563:63 LF357341:103 MA592918:103 ENST00000413656.5:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 AY046564:-456 ENST00000376590.9:-484 NM_005957.5:-484 AK312907:-484 | |||
|annotation=promoter-TSS (NR_046428) | |annotation=promoter-TSS (NR_046428) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=chloride voltage-gated channel 6 | |gene_description=chloride voltage-gated channel 6 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_046428 | |nearest_promoter_id=NR_046428 | ||
|nearest_refseq=NM_001286 | |nearest_refseq=NM_001286 | ||
|nearest_transcripts=ENST00000376592.6:63 ENST00000376585.6:63 ENST00000431243.6:63 AY046561:63 AY046562:63 AY046563:63 LF357341:103 MA592918:103 ENST00000413656.5:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 AY046564:-456 ENST00000376590.9:-484 NM_005957.5:-484 AK312907:-484 | |||
|nearest_unigene=Hs.193043 | |nearest_unigene=Hs.193043 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 07:10, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2127304,EH38E1319121) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -618 |
|---|---|
| Nearest PromoterID: | NR_046428 |
| Entrez ID: | 1185 |
| Nearest Unigene: | Hs.193043 |
| Nearest Refseq: | NM_001286 |
| Nearest Ensembl: | ENSG00000011021 |
| Gene Name: | |
| Gene Alias: | CLC-6 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.600000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000376592.6:63 ENST00000376585.6:63 ENST00000431243.6:63 AY046561:63 AY046562:63 AY046563:63 LF357341:103 MA592918:103 ENST00000413656.5:182 AY046565:182 BC053509:-445 ENST00000418034.1:-456 AY046564:-456 ENST00000376590.9:-484 NM_005957.5:-484 AK312907:-484" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.