TSS: Rfhg 166405.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF213343:-107 MA448920:-107 LF212569:-489 MA448146:-489 | |||
|annotation=intron (NR_073034, intron 2 of 3) | |annotation=intron (NR_073034, intron 2 of 3) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
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|gene_description=orthodenticle homeobox 2 | |gene_description=orthodenticle homeobox 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001270525 | |nearest_promoter_id=NM_001270525 | ||
|nearest_refseq=NM_021728 | |nearest_refseq=NM_021728 | ||
|nearest_transcripts=LF212569:-489 MA448146:-489 | |||
|nearest_unigene=Hs.288655 | |nearest_unigene=Hs.288655 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 08:00, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2722521,EH38E1716989) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2371 |
|---|---|
| Nearest PromoterID: | NM_001270525 |
| Entrez ID: | 5015 |
| Nearest Unigene: | Hs.288655 |
| Nearest Refseq: | NM_021728 |
| Nearest Ensembl: | ENSG00000165588 |
| Gene Name: | |
| Gene Alias: | CPHD6|MCOPS5 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |