TSS: Rfhg 16718.1: Difference between revisions

Latest revision as of 08:15, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_16718.1
Species:	human
Chr:	chr1

Start:	183023308
End:	183023318
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2249033,EH38E1403519)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF205394:96 MA440971:96
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000258341.5:102 NM_002293.4:102 BC067813:142 LF320111:143 MA555688:143 J03202:144 AB385108:399 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-107
Nearest PromoterID:	NM_002293
Entrez ID:	3915
Nearest Unigene:	Hs.609663
Nearest Refseq:	NM_002293
Nearest Ensembl:	ENSG00000135862
Gene Name:
Gene Alias:	LAMB2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.909091
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF205394:96 MA440971:96 ENST00000258341.5:102 NM_002293.4:102 BC067813:142 LF320111:143 MA555688:143 J03202:144 AB385108:399
 |annotation=promoter-TSS (NM_002293)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=laminin subunit gamma 1
 |gene_id=
-|gene_name=LAMC1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002293
 |nearest_refseq=NM_002293
+|nearest_transcripts=ENST00000258341.5:102 NM_002293.4:102 BC067813:142 LF320111:143 MA555688:143 J03202:144 AB385108:399
 |nearest_unigene=Hs.609663
 |peak_score=1