TSS: Rfhg 171562.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=AB590506:-21 ENST00000551312.6:-32 ENST00000557230.1:-32 AF319522:-32 AF319523:-32 BC025178:-45 ENST00000338327.4:-52 ENST00000577565.1:-61 ENST00000580062.5:-62 ENST00000579070.5:-63 BC063608:-66 BC010057:-67 BC003180:-67 BC018809:-68 BC000445:-69 AF101044:-77 AK098563:-77 J04615:-77 U41303:-78 ENST00000390687.9:-79 NM_022804.3:-79 NM_001394334.1:-79 NM_005678.5:-79 NM_001400767.1:-79 NM_001400726.1:-79 NM_001400730.1:-79 NM_001400762.1:-79 NM_001378255.1:-79 NM_001378256.1:-79 NM_001378253.1:-79 NM_001400727.1:-79 NM_001400768.1:-79 NM_001400765.1:-79 NM_003097.6:-79 NM_001378252.1:-79 NM_001400764.1:-79 NM_001400728.1:-79 NM_001378249.1:-79 NM_001400725.1:-79 NM_001349463.2:-79 NM_001378254.1:-79 NM_001400729.1:-79 NM_001400763.1:-79 NM_001349464.2:-79 NM_001349465.2:-79 ENST00000577949.5:-80 ENST00000554227.6:-118 ENST00000584968.5:-131 ENST00000346403.10:-131
|annotation=promoter-TSS (NM_001349465)
|annotation=promoter-TSS (NM_001349465)
|ccre_category=PLS
|ccre_category=PLS
Line 15: Line 16:
|gene_description=small nuclear ribonucleoprotein polypeptide N
|gene_description=small nuclear ribonucleoprotein polypeptide N
|gene_id=8926
|gene_id=8926
|gene_name=SNRPN
|gene_name=SNRPN upstream open reading frame
|gene_source=HGNC:11171
|gene_source=HGNC:11171
|gene_symbol=SNURF
|gene_symbol=SNURF
Line 25: Line 26:
|nearest_promoter_id=NM_001349464
|nearest_promoter_id=NM_001349464
|nearest_refseq=NM_003097
|nearest_refseq=NM_003097
|nearest_transcripts=ENST00000551312.6:-32 ENST00000557230.1:-32 AF319522:-32 AF319523:-32 BC025178:-45 ENST00000338327.4:-52 ENST00000577565.1:-61 ENST00000580062.5:-62 ENST00000579070.5:-63 BC063608:-66 BC010057:-67 BC003180:-67 BC018809:-68 BC000445:-69 AF101044:-77 AK098563:-77 J04615:-77 U41303:-78 ENST00000390687.9:-79 NM_022804.3:-79 NM_001394334.1:-79 NM_005678.5:-79 NM_001400767.1:-79 NM_001400726.1:-79 NM_001400730.1:-79 NM_001400762.1:-79 NM_001378255.1:-79 NM_001378256.1:-79 NM_001378253.1:-79 NM_001400727.1:-79 NM_001400768.1:-79 NM_001400765.1:-79 NM_003097.6:-79 NM_001378252.1:-79 NM_001400764.1:-79 NM_001400728.1:-79 NM_001378249.1:-79 NM_001400725.1:-79 NM_001349463.2:-79 NM_001378254.1:-79 NM_001400729.1:-79 NM_001400763.1:-79 NM_001349464.2:-79 NM_001349465.2:-79 ENST00000577949.5:-80 ENST00000554227.6:-118 ENST00000584968.5:-131 ENST00000346403.10:-131
|nearest_unigene=Hs.564847
|nearest_unigene=Hs.564847
|peak_score=1
|peak_score=1

Latest revision as of 09:35, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_171562.1
Species:human
Chr:chr15
Start:24955066
End:24955066
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2768295,EH38E1748362)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB590506:-21
GeneID:8926
HGNC/MGI_ID:HGNC:11171
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000551312.6:-32
  • ENST00000557230.1:-32
  • AF319522:-32
  • AF319523:-32
  • BC025178:-45
  • ENST00000338327.4:-52
  • ENST00000577565.1:-61
  • ENST00000580062.5:-62
  • ENST00000579070.5:-63
  • BC063608:-66
  • BC010057:-67
  • BC003180:-67
  • BC018809:-68
  • BC000445:-69
  • AF101044:-77
  • AK098563:-77
  • J04615:-77
  • U41303:-78
  • ENST00000390687.9:-79
  • NM_022804.3:-79
  • NM_001394334.1:-79
  • NM_005678.5:-79
  • NM_001400767.1:-79
  • NM_001400726.1:-79
  • NM_001400730.1:-79
  • NM_001400762.1:-79
  • NM_001378255.1:-79
  • NM_001378256.1:-79
  • NM_001378253.1:-79
  • NM_001400727.1:-79
  • NM_001400768.1:-79
  • NM_001400765.1:-79
  • NM_003097.6:-79
  • NM_001378252.1:-79
  • NM_001400764.1:-79
  • NM_001400728.1:-79
  • NM_001378249.1:-79
  • NM_001400725.1:-79
  • NM_001349463.2:-79
  • NM_001378254.1:-79
  • NM_001400729.1:-79
  • NM_001400763.1:-79
  • NM_001349464.2:-79
  • NM_001349465.2:-79
  • ENST00000577949.5:-80
  • ENST00000554227.6:-118
  • ENST00000584968.5:-131
  • ENST00000346403.10:-131
view more...
Gene_name:SNRPN upstream open reading frame
Gene_symbol:SNURF
Gene_synonyms:
Gene_source:HGNC:11171



TATA-Box annotation

Distance to TSS:74
Nearest PromoterID:NM_001349464
Entrez ID:6638
Nearest Unigene:Hs.564847
Nearest Refseq:NM_003097
Nearest Ensembl:ENSG00000128739
Gene Name:SNRPN upstream open reading frame
Gene Alias:HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N
Gene Type:protein-coding
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "ENST00000551312.6:-32 ENST00000557230.1:-32 AF319522:-32 AF319523:-32 BC025178:-45 ENST00000338327.4:-52 ENST00000577565.1:-61 ENST00000580062.5:-62 ENST00000579070.5:-63 BC063608:-66 BC010057:-67 BC003180:-67 BC018809:-68 BC000445:-69 AF101044:-77 AK098563:-77 J04615:-77 U41303:-78 ENST00000390687.9:-79 NM_022804.3:-79 NM_001394334.1:-79 NM_005678.5:-79 NM_001400767.1:-79 NM_001400726.1:-79 NM_001400730.1:-79 NM_001400762.1:-79 NM_001378255.1:-79 NM_001378256.1:-79 NM_001378253.1:-79 NM_001400727.1:-79 NM_001400768.1:-79 NM_001400765.1:-79 NM_003097.6:-79 NM_001378252.1:-79 NM_001400764.1:-79 NM_001400728.1:-79 NM_001378249.1:-79 NM_001400725.1:-79 NM_001349463.2:-79 NM_001378254.1:-79 NM_001400729.1:-79 NM_001400763.1:-79 NM_001349464.2:-79 NM_001349465.2:-79 ENST00000577949.5:-80 ENST00000554227.6:-118 ENST00000584968.5:-131 ENST00000346403.10:-131" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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