TSS: Rfhg 171766.1: Difference between revisions

Latest revision as of 09:39, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_171766.1
Species:	human
Chr:	chr15

Start:	28322135
End:	28322149
Strand:	-

Source datasets

DRA000914|RAMPAGE

Protocol

CAGE|RAMPAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000564734.5:0 BC045544:0 BC142951:0
GeneID:	8924
HGNC/MGI_ID:	HGNC:4868
UniProt_ID:	H3BRG9
Nearer transcript ids and distances:	ENST00000563945.1:16 ENST00000261609.13:-30 NM_004667.6:-30 view more...

Gene_name:	HECT and RLD domain containing E3 ubiquitin protein ligase 2
Gene_symbol:	HERC2
Gene_synonyms:	D15F37S1 jdf2 p528
Gene_source:	HGNC:4868

TATA-Box annotation

Distance to TSS:	10
Nearest PromoterID:	NM_004667
Entrez ID:	8924
Nearest Unigene:	Hs.434890
Nearest Refseq:	NM_004667
Nearest Ensembl:	ENSG00000128731
Gene Name:	HECT and RLD domain containing E3 ubiquitin protein ligase 2
Gene Alias:	D15F37S1\|MRT38\|SHEP1\|jdf2\|p528
Gene Type:	protein-coding
CpG%:	0.142857
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000564734.5:0 BC045544:0 BC142951:0 ENST00000563945.1:16 ENST00000261609.13:-30 NM_004667.6:-30
 |annotation=promoter-TSS (NM_004667)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=HECT and RLD domain containing E3 ubiquitin protein ligase 2
 |gene_id=8924
-|gene_name=HERC2
+|gene_name=HECT and RLD domain containing E3 ubiquitin protein ligase 2
 |gene_source=HGNC:4868
 |gene_symbol=HERC2
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_004667
 |nearest_refseq=NM_004667
+|nearest_transcripts=ENST00000563945.1:16 ENST00000261609.13:-30 NM_004667.6:-30
 |nearest_unigene=Hs.434890
 |peak_score=1