TSS: Rfhg 172007.1: Difference between revisions

Latest revision as of 09:43, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_172007.1
Species:	human
Chr:	chr15

Start:	32719185
End:	32719200
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2773160,EH38E1751382)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK093166:178
GeneID:	100131315
HGNC/MGI_ID:	HGNC:55411
UniProt_ID:
Nearer transcript ids and distances:	NR_109767.1:320 ENST00000560363.1:331 view more...

Gene_name:	GREM1 antisense RNA 1
Gene_symbol:	GREM1-AS1
Gene_synonyms:
Gene_source:	HGNC:55411

TATA-Box annotation

Distance to TSS:	-327
Nearest PromoterID:	NR_109767
Entrez ID:	100131315
Nearest Unigene:	Hs.610545
Nearest Refseq:	NR_109767
Nearest Ensembl:	ENSG00000259721
Gene Name:	GREM1 antisense RNA 1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.437500
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000558441.1:178 AK093166:178 NR_109767.1:320 ENST00000560363.1:331
 |annotation=promoter-TSS (NR_109767)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=uncharacterized LOC100131315
 |gene_id=100131315
-|gene_name=LOC100131315
+|gene_name=GREM1 antisense RNA 1
 |gene_source=HGNC:55411
 |gene_symbol=GREM1-AS1
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_109767
 |nearest_refseq=NR_109767
+|nearest_transcripts=NR_109767.1:320 ENST00000560363.1:331
 |nearest_unigene=Hs.610545
 |peak_score=1