TSS: Rfhg 175001.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=exon (NM_015059, exon 28 of 56) | |annotation=exon (NM_015059, exon 28 of 56) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=microRNA 190a | |gene_description=microRNA 190a | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_029709 | |nearest_promoter_id=NR_029709 | ||
|nearest_refseq=NR_029709 | |nearest_refseq=NR_029709 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 10:37, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|DRA013844|PRJDB5282 | |||||||||||||||
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| Protocol | CAGE|C1CAGE | |||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2797606,EH38E1768342) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -84541 |
|---|---|
| Nearest PromoterID: | NR_029709 |
| Entrez ID: | 406965 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_029709 |
| Nearest Ensembl: | ENSG00000211137 |
| Gene Name: | |
| Gene Alias: | MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a |
| Gene Type: | ncRNA |
| CpG%: | 0.010989 |
| GC%: | 0.619565 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |