TSS: Rfhg 175179.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000649220.2:0 ENST00000668026.1:0 ENST00000657335.1:0 ENST00000656865.1:0 ENST00000560962.6:0 ENST00000558831.5:0 ENST00000559737.6:0 ENST00000560622.5:0 ENST00000561191.1:0 BC036918:0 BC017581:0 AK093077:0 NR_034080.1:-13 | |||
|annotation=promoter-TSS (NR_034080) | |annotation=promoter-TSS (NR_034080) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=USP3 antisense RNA 1 | |gene_description=USP3 antisense RNA 1 | ||
|gene_id=100130855 | |gene_id=100130855 | ||
|gene_name=USP3 | |gene_name=USP3 antisense RNA 1 | ||
|gene_source=HGNC:44140 | |gene_source=HGNC:44140 | ||
|gene_symbol=USP3-AS1 | |gene_symbol=USP3-AS1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_034080 | |nearest_promoter_id=NR_034080 | ||
|nearest_refseq=NR_034080 | |nearest_refseq=NR_034080 | ||
|nearest_transcripts=NR_034080.1:-13 | |||
|nearest_unigene=Hs.631163 | |nearest_unigene=Hs.631163 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 10:41, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2798727,EH38E1769300) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NR_034080 |
| Entrez ID: | 100130855 |
| Nearest Unigene: | Hs.631163 |
| Nearest Refseq: | NR_034080 |
| Nearest Ensembl: | ENSG00000259248 |
| Gene Name: | USP3 antisense RNA 1 |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.155844 |
| GC%: | 0.730769 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.