TSS: Rfhg 175323.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000616065.4:0 ENST00000502574.1:0 ENST00000323544.5:0 NM_001195059.2:0 NM_025201.5:0 AK311036:0 AK096203:0 BC008744:0 AF494534:13 ENST00000437723.1:25 | |||
|annotation=promoter-TSS (NM_025201) | |annotation=promoter-TSS (NM_025201) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 15: | Line 16: | ||
|gene_description=pleckstrin homology domain containing O2 | |gene_description=pleckstrin homology domain containing O2 | ||
|gene_id=80301 | |gene_id=80301 | ||
|gene_name= | |gene_name=pleckstrin homology domain containing O2 | ||
|gene_source=HGNC:30026 | |gene_source=HGNC:30026 | ||
|gene_symbol=PLEKHO2 | |gene_symbol=PLEKHO2 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_025201 | |nearest_promoter_id=NM_025201 | ||
|nearest_refseq=NM_025201 | |nearest_refseq=NM_025201 | ||
|nearest_transcripts=AF494534:13 ENST00000437723.1:25 | |||
|nearest_unigene=Hs.709337 | |nearest_unigene=Hs.709337 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 10:43, 14 March 2025
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|EPD|DBTSS|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA548673|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|TSS-seq|NETCAGE|ReCappable-seq|SLIC_CAGE | |||||||||||||||
| TSS cluster detected* | 9 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_025201 |
| Entrez ID: | 80301 |
| Nearest Unigene: | Hs.709337 |
| Nearest Refseq: | NM_025201 |
| Nearest Ensembl: | ENSG00000241839 |
| Gene Name: | pleckstrin homology domain containing O2 |
| Gene Alias: | PLEKHQ1|PP1628|pp9099 |
| Gene Type: | protein-coding |
| CpG%: | 0.121951 |
| GC%: | 0.714286 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.