TSS: Hg 10232.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=-42953 |entrez_id=101929074 |gc_percent=0.646766 |gene_alias=- |gene_description=PIK3CD antisense RNA 2 |gene_name=PIK3CD-AS2 |...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=LF357460:77 MA593037:77 LF357459:-84 MA593036:-84 LF357458:-153 MA593035:-153 LF206735:-173 MA442312:-173 | |||
|chr=chr1 | |||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance_to_tss= | |distance=77 | ||
|entrez_id= | |distance_to_tss=39060 | ||
|end=9730533 | |||
|end_of_center_position=9730528 | |||
|entrez_id=5293 | |||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias= | |gene_alias=APDS{{!}}IMD14{{!}}P110DELTA{{!}}PI3K{{!}}p110D | ||
|gene_description= | |gene_description=phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta | ||
|gene_name=PIK3CD | |gene_name=PIK3CD | ||
|gene_type= | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000171608 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001350235 | ||
|nearest_refseq= | |nearest_refseq=NM_005026 | ||
|nearest_unigene=Hs. | |nearest_unigene=Hs.518451 | ||
|num_trans=8 | |||
|species=human | |||
|start=9730521 | |||
|start_of_center_position=9730527 | |||
|strand=- | |||
|transcript_name=LF357460 MA593037 | |||
|tss_classification=yes | |||
|tss_id=hg_10232.1 | |tss_id=hg_10232.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 17:00, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 39060 |
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| Nearest PromoterID: | NM_001350235 |
| Entrez ID: | 5293 |
| Nearest Unigene: | Hs.518451 |
| Nearest Refseq: | NM_005026 |
| Nearest Ensembl: | ENSG00000171608 |
| Gene Name: | PIK3CD |
| Gene Alias: | APDS|IMD14|P110DELTA|PI3K|p110D |
| Gene Description: | phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |