TSS: Rfhg 177356.1: Difference between revisions

Latest revision as of 11:24, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_177356.1
Species:	human
Chr:	chr15

Start:	82647801
End:	82647813
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000560650.1:-31 BC035360:-31
GeneID:	283692
HGNC/MGI_ID:	HGNC:27523
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CPEB1 antisense RNA 1
Gene_symbol:	CPEB1-AS1
Gene_synonyms:
Gene_source:	HGNC:27523

TATA-Box annotation

Distance to TSS:	37
Nearest PromoterID:	NR_046096
Entrez ID:	283692
Nearest Unigene:	Hs.578667
Nearest Refseq:	NR_046096
Nearest Ensembl:	ENSG00000259462
Gene Name:	CPEB1 antisense RNA 1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.083333
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000560650.1:-31 NR_046096.1:-31 BC035360:-31
 |annotation=promoter-TSS (NM_001288819)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=CPEB1 antisense RNA 1
 |gene_id=283692
-|gene_name=CPEB1-AS1
+|gene_name=CPEB1 antisense RNA 1
 |gene_source=HGNC:27523
 |gene_symbol=CPEB1-AS1
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_046096
 |nearest_refseq=NR_046096
+|nearest_transcripts=
 |nearest_unigene=Hs.578667
 |peak_score=1