TSS: Rfhg 179335.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF340803:54 MA576380:54 LF340804:162 MA576381:162 LF340805:318 MA576382:318 LF340802:-332 MA576379:-332 | |||
|annotation=3' UTR (NM_153350, exon 6 of 6) | |annotation=3' UTR (NM_153350, exon 6 of 6) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
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|gene_description=WD repeat domain 24 | |gene_description=WD repeat domain 24 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_032259 | |nearest_promoter_id=NM_032259 | ||
|nearest_refseq=NM_032259 | |nearest_refseq=NM_032259 | ||
|nearest_transcripts=LF340804:162 MA576381:162 LF340805:318 MA576382:318 LF340802:-332 MA576379:-332 | |||
|nearest_unigene=Hs.459632 | |nearest_unigene=Hs.459632 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 11:59, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS (EH38D2835051,EH38E1794989) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3671 |
|---|---|
| Nearest PromoterID: | NM_032259 |
| Entrez ID: | 84219 |
| Nearest Unigene: | Hs.459632 |
| Nearest Refseq: | NM_032259 |
| Nearest Ensembl: | ENSG00000127580 |
| Gene Name: | |
| Gene Alias: | C16orf21|JFP7 |
| Gene Type: | protein-coding |
| CpG%: | 0.120000 |
| GC%: | 0.923077 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |