TSS: Rfhg 190644.1: Difference between revisions

Latest revision as of 15:32, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_190644.1
Species:	human
Chr:	chr17

Start:	18260559
End:	18260671
Strand:	+

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2915414,EH38E1850975)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000578174.5:0 ENST00000395704.8:0 ENST00000395703.8:0 ENST00000577216.1:0 ENST00000578621.5:0 ENST00000579341.5:0 ENST00000583745.1:0 ENST00000323019.9:0 AK128310:0
GeneID:	125170
HGNC/MGI_ID:	HGNC:17920
UniProt_ID:	A8MT25 J3KTJ4 J3QR30 K7EKV6 Q96C03
Nearer transcript ids and distances:	AK056165:-4 LF326097:324 MA561674:324 ENST00000395706.2:439 NM_148886.2:439 AF467443:439 BC014973:439 view more...

Gene_name:	mitochondrial elongation factor 2
Gene_symbol:	MIEF2
Gene_synonyms:	MGC23130 MiD49
Gene_source:	HGNC:17920

TATA-Box annotation

Distance to TSS:	-47
Nearest PromoterID:	NM_139162
Entrez ID:	125170
Nearest Unigene:	Hs.655555
Nearest Refseq:	NM_139162
Nearest Ensembl:	ENSG00000177427
Gene Name:	mitochondrial elongation factor 2
Gene Alias:	MID49\|SMCR7
Gene Type:	protein-coding
CpG%:	0.089286
GC%:	0.654867
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000578174.5:0 ENST00000395704.8:0 ENST00000395703.8:0 ENST00000577216.1:0 ENST00000578621.5:0 ENST00000579341.5:0 ENST00000583745.1:0 ENST00000323019.9:0 NM_001144900.3:0 NM_139162.4:0 LF209095:0 MA444672:0 AK128310:0 AK056165:-4 LF326097:324 MA561674:324 ENST00000395706.2:439 NM_148886.2:439 AF467443:439 BC014973:439
 |annotation=promoter-TSS (NM_001144900)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=mitochondrial elongation factor 2
 |gene_id=125170
-|gene_name=MIEF2
+|gene_name=mitochondrial elongation factor 2
 |gene_source=HGNC:17920
 |gene_symbol=MIEF2
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_139162
 |nearest_refseq=NM_139162
+|nearest_transcripts=AK056165:-4 LF326097:324 MA561674:324 ENST00000395706.2:439 NM_148886.2:439 AF467443:439 BC014973:439
 |nearest_unigene=Hs.655555
 |peak_score=1