TSS: Rfhg 191531.1: Difference between revisions

Latest revision as of 15:49, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_191531.1
Species:	human
Chr:	chr17

Start:	29593046
End:	29593056
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2920885,EH38E1854954)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF212411:-54 MA447988:-54
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000394859.8:76 NM_152345.5:76 LF213235:-128 MA448812:-128 ENST00000614878.4:412 ENST00000488766.5:412 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-81
Nearest PromoterID:	NM_152345
Entrez ID:	124930
Nearest Unigene:	Hs.662164
Nearest Refseq:	NM_152345
Nearest Ensembl:	ENSG00000198720
Gene Name:
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF212411:-54 MA447988:-54 ENST00000394859.8:76 NM_152345.5:76 LF213235:-128 MA448812:-128 ENST00000614878.4:412 ENST00000488766.5:412
 |annotation=promoter-TSS (NM_152345)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=ankyrin repeat domain 13B
 |gene_id=
-|gene_name=ANKRD13B
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_152345
 |nearest_refseq=NM_152345
+|nearest_transcripts=ENST00000394859.8:76 NM_152345.5:76 LF213235:-128 MA448812:-128 ENST00000614878.4:412 ENST00000488766.5:412
 |nearest_unigene=Hs.662164
 |peak_score=1