TSS: Rfhg 193115.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=LF327725:0 MA563302:0 LF327724:-68 MA563301:-68 LF327723:-207 MA563300:-207 LF327726:226 MA563303:226 LF327727:404 MA563304:404 | |||
|annotation=3' UTR (NM_001552, exon 4 of 4) | |annotation=3' UTR (NM_001552, exon 4 of 4) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=insulin like growth factor binding protein 4 | |gene_description=insulin like growth factor binding protein 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001552 | |nearest_promoter_id=NM_001552 | ||
|nearest_refseq=NM_001552 | |nearest_refseq=NM_001552 | ||
|nearest_transcripts=LF327724:-68 MA563301:-68 LF327723:-207 MA563300:-207 LF327726:226 MA563303:226 LF327727:404 MA563304:404 | |||
|nearest_unigene=Hs.462998 | |nearest_unigene=Hs.462998 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 16:19, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2930459,EH38E1861818) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 13220 |
|---|---|
| Nearest PromoterID: | NM_001552 |
| Entrez ID: | 3487 |
| Nearest Unigene: | Hs.462998 |
| Nearest Refseq: | NM_001552 |
| Nearest Ensembl: | ENSG00000141753 |
| Gene Name: | |
| Gene Alias: | BP-4|HT29-IGFBP|IBP4|IGFBP-4 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.533333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |