TSS: Rfhg 194021.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000361523.8:0 ENST00000617806.4:0 ENST00000590099.6:0 ENST00000438274.7:0 ENST00000543382.6:0 ENST00000593205.5:0 ENST00000591085.1:0 ENST00000585515.5:0 ENST00000591307.5:0 ENST00000593112.1:0 NM_003766.5:0 NM_001313998.2:0 NM_001314000.2:0 HM005628:0 BC010276:0 BX647788:0 AF139131:0 AK298619:0 AK299616:0 AK223411:0 AK312651:0 NR_106839.1:306 LY480905:306 LY495834:306 LY496364:306 LY497113:306 LY497733:306 LY498358:306 LY499251:306 LY499927:306 LY500617:306 LZ238781:306 MS868999:306 MS869536:306 MS880566:306 MS884300:306 MS885046:306 MS994372:306 MS996799:306 MA806055:306 LY616545:306 MB407107:306 MB473017:306 LY480782:311 LY495684:311 LY496149:311 LY496920:311 LY497559:311 LY498134:311 LY498973:311 LY499728:311 LY500431:311 LZ238522:311 MS868849:311 MS869350:311 MS880288:311 MS884107:311 MS884847:311 MS994157:311 MS996625:311 MA805778:311 LY616286:311 MB406708:311 MB472786:311 NM_001313999.1:370 AF077301:372 KC776730:372 DQ891633:373 DQ894823:373
|annotation=promoter-TSS (NM_001313998)
|annotation=promoter-TSS (NM_001313998)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=beclin 1
|gene_description=beclin 1
|gene_id=8678
|gene_id=8678
|gene_name=BECN1
|gene_name=beclin 1
|gene_source=HGNC:1034
|gene_source=HGNC:1034
|gene_symbol=BECN1
|gene_symbol=BECN1
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|nearest_promoter_id=NM_001313998
|nearest_promoter_id=NM_001313998
|nearest_refseq=NM_003766
|nearest_refseq=NM_003766
|nearest_transcripts=NR_106839.1:306 LY480905:306 LY495834:306 LY496364:306 LY497113:306 LY497733:306 LY498358:306 LY499251:306 LY499927:306 LY500617:306 LZ238781:306 MS868999:306 MS869536:306 MS880566:306 MS884300:306 MS885046:306 MS994372:306 MS996799:306 MA806055:306 LY616545:306 MB407107:306 MB473017:306 LY480782:311 LY495684:311 LY496149:311 LY496920:311 LY497559:311 LY498134:311 LY498973:311 LY499728:311 LY500431:311 LZ238522:311 MS868849:311 MS869350:311 MS880288:311 MS884107:311 MS884847:311 MS994157:311 MS996625:311 MA805778:311 LY616286:311 MB406708:311 MB472786:311 NM_001313999.1:370 AF077301:372 KC776730:372 DQ891633:373 DQ894823:373
|nearest_unigene=Hs.716464
|nearest_unigene=Hs.716464
|peak_score=1
|peak_score=1

Latest revision as of 16:34, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_194021.1
TSS ID(Version3):hg_166192.1
Species:human
Chr:chr17
Start:42824249
End:42824302
Strand:-
Source datasetsFANTOM5|EPD|DBTSS|PRJNA401781|PRJNA615891|PRJNA548673
|PRJNA597322|PRJDB5282|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|TSS-seq|RAMPAGE|TIF-seq2|oligo_capping
|ReCappable-seq|SLIC_CAGE|STRIPE-seq|C1CAGE|NETCAGE
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2933065,EH38E1863903)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000361523.8:0
ENST00000617806.4:0
ENST00000590099.6:0
ENST00000438274.7:0
ENST00000543382.6:0
ENST00000593205.5:0
ENST00000591085.1:0
ENST00000585515.5:0
ENST00000591307.5:0
ENST00000593112.1:0
HM005628:0
BC010276:0
BX647788:0
AF139131:0
AK298619:0
AK299616:0
AK223411:0
AK312651:0
GeneID:8678
HGNC/MGI_ID:HGNC:1034
UniProt_ID:A0A024R1X5 B4DQ36 B4DS82 E7EV84 K7EKK2 K7EN35 Q53F78
Nearer transcript ids and distances:
  • NR_106839.1:306
  • LY480905:306
  • LY495834:306
  • LY496364:306
  • LY497113:306
  • LY497733:306
  • LY498358:306
  • LY499251:306
  • LY499927:306
  • LY500617:306
  • LZ238781:306
  • MS868999:306
  • MS869536:306
  • MS880566:306
  • MS884300:306
  • MS885046:306
  • MS994372:306
  • MS996799:306
  • MA806055:306
  • LY616545:306
  • MB407107:306
  • MB473017:306
  • LY480782:311
  • LY495684:311
  • LY496149:311
  • LY496920:311
  • LY497559:311
  • LY498134:311
  • LY498973:311
  • LY499728:311
  • LY500431:311
  • LZ238522:311
  • MS868849:311
  • MS869350:311
  • MS880288:311
  • MS884107:311
  • MS884847:311
  • MS994157:311
  • MS996625:311
  • MA805778:311
  • LY616286:311
  • MB406708:311
  • MB472786:311
  • NM_001313999.1:370
  • AF077301:372
  • KC776730:372
  • DQ891633:373
  • DQ894823:373
view more...
Gene_name:beclin 1
Gene_symbol:BECN1
Gene_synonyms:ATG6 VPS30
Gene_source:HGNC:1034



TATA-Box annotation

Distance to TSS:7
Nearest PromoterID:NM_001313998
Entrez ID:8678
Nearest Unigene:Hs.716464
Nearest Refseq:NM_003766
Nearest Ensembl:ENSG00000126581
Gene Name:beclin 1
Gene Alias:ATG6|VPS30|beclin1
Gene Type:protein-coding
CpG%:0.132075
GC%:0.648148
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "NR_106839.1:306 LY480905:306 LY495834:306 LY496364:306 LY497113:306 LY497733:306 LY498358:306 LY499251:306 LY499927:306 LY500617:306 LZ238781:306 MS868999:306 MS869536:306 MS880566:306 MS884300:306 MS885046:306 MS994372:306 MS996799:306 MA806055:306 LY616545:306 MB407107:306 MB473017:306 LY480782:311 LY495684:311 LY496149:311 LY496920:311 LY497559:311 LY498134:311 LY498973:311 LY499728:311 LY500431:311 LZ238522:311 MS868849:311 MS869350:311 MS880288:311 MS884107:311 MS884847:311 MS994157:311 MS996625:311 MA805778:311 LY616286:311 MB406708:311 MB472786:311 NM_001313999.1:370 AF077301:372 KC776730:372 DQ891633:373 DQ894823:373" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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