TSS: Rfhg 194385.1: Difference between revisions

Latest revision as of 16:41, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_194385.1
Species:	human
Chr:	chr17

Start:	44315150
End:	44315154
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2934609,EH38E1865112)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF328072:12 MA563649:12
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF328073:92 MA563650:92 LF328071:-223 MA563648:-223 BC013240:362 LF328074:368 MA563651:368 ENST00000593079.1:-392 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	6551
Nearest PromoterID:	NM_001144825
Entrez ID:	10900
Nearest Unigene:	Hs.500197
Nearest Refseq:	NM_006695
Nearest Ensembl:	ENSG00000108309
Gene Name:
Gene Alias:	RAP2IP\|RPIP-8\|RPIP8
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF328072:12 MA563649:12 LF328073:92 MA563650:92 LF328071:-223 MA563648:-223 BC013240:362 LF328074:368 MA563651:368 ENST00000593079.1:-392
 |annotation=intron (NM_001144825, intron 6 of 10)
 |ccre_category=PLS
@@ Line 15: / Line 16: @@
 |gene_description=RUN domain containing 3A
 |gene_id=
-|gene_name=RUNDC3A
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001144825
 |nearest_refseq=NM_006695
+|nearest_transcripts=LF328073:92 MA563650:92 LF328071:-223 MA563648:-223 BC013240:362 LF328074:368 MA563651:368 ENST00000593079.1:-392
 |nearest_unigene=Hs.500197
 |peak_score=1