TSS: Rfhg 19649.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000261455.9:0 ENST00000535273.2:0 ENST00000471937.1:0 NM_001198862.2:0 NM_018252.3:0 NM_001377480.1:0 NM_001377478.1:0 NM_001377479.1:0 NR_165303.1:0 AK001736:0 BC006320:0 AK024066:0 AK297200:0 CU675347:58 HQ448200:59 KJ894167:59 CR457268:59 AK295224:84 | |||
|annotation=promoter-TSS (NM_018252) | |annotation=promoter-TSS (NM_018252) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|gene_description=proton activated chloride channel 1 | |gene_description=proton activated chloride channel 1 | ||
|gene_id=55248 | |gene_id=55248 | ||
|gene_name= | |gene_name=proton activated chloride channel 1 | ||
|gene_source=HGNC:25593 | |gene_source=HGNC:25593 | ||
|gene_symbol=PACC1 | |gene_symbol=PACC1 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_018252 | |nearest_promoter_id=NM_018252 | ||
|nearest_refseq=NM_018252 | |nearest_refseq=NM_018252 | ||
|nearest_transcripts=CU675347:58 HQ448200:59 KJ894167:59 CR457268:59 AK295224:84 | |||
|nearest_unigene=Hs.445386 | |nearest_unigene=Hs.445386 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 17:24, 14 March 2025
Basic information about the TSS
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| Source datasets | PRJDB5282|PRJNA4843412|DRA013844|PRJNA615891|PRJNA401781 |PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | C1CAGE|NETCAGE|CAGE|SLIC_CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 6 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2273154,EH38E1420197) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_018252 |
| Entrez ID: | 55248 |
| Nearest Unigene: | Hs.445386 |
| Nearest Refseq: | NM_018252 |
| Nearest Ensembl: | ENSG00000065600 |
| Gene Name: | proton activated chloride channel 1 |
| Gene Alias: | C1orf75|PAC|TMEM206 |
| Gene Type: | protein-coding |
| CpG%: | 0.140187 |
| GC%: | 0.731481 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.