TSS: Rfhg 201136.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=NM_001384684.1:0 NM_001384690.1:0 NM_001384688.1:0 ENST00000580989.5:-31 | |||
|annotation=intron (NM_001330557, intron 1 of 21) | |annotation=intron (NM_001330557, intron 1 of 21) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 15: | Line 16: | ||
|gene_description=erythrocyte membrane protein band 4.1 like 3 | |gene_description=erythrocyte membrane protein band 4.1 like 3 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001281533 | |nearest_promoter_id=NM_001281533 | ||
|nearest_refseq=NM_012307 | |nearest_refseq=NM_012307 | ||
|nearest_transcripts=ENST00000580989.5:-31 | |||
|nearest_unigene=Hs.213394 | |nearest_unigene=Hs.213394 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 18:51, 14 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D2977382,EH38E1896927) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 19173 |
|---|---|
| Nearest PromoterID: | NM_001281533 |
| Entrez ID: | 23136 |
| Nearest Unigene: | Hs.213394 |
| Nearest Refseq: | NM_012307 |
| Nearest Ensembl: | ENSG00000082397 |
| Gene Name: | |
| Gene Alias: | 4.1B|DAL-1|DAL1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.368421 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |