TSS: Rfhg 201539.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF385402:149 MA620979:149 ENST00000522713.5:191 ENST00000320477.10:191 NM_001279.4:191 NM_001318383.2:191 NR_134607.2:191 AK122762:191 AF041378:214 AY364639:214
|annotation=promoter-TSS (NM_001318383)
|annotation=promoter-TSS (NM_001318383)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=cell death inducing DFFA like effector a
|gene_description=cell death inducing DFFA like effector a
|gene_id=
|gene_id=
|gene_name=CIDEA
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_001318383
|nearest_promoter_id=NM_001318383
|nearest_refseq=NM_001279
|nearest_refseq=NM_001279
|nearest_transcripts=ENST00000522713.5:191 ENST00000320477.10:191 NM_001279.4:191 NM_001318383.2:191 NR_134607.2:191 AK122762:191 AF041378:214 AY364639:214
|nearest_unigene=Hs.249129
|nearest_unigene=Hs.249129
|peak_score=1
|peak_score=1

Latest revision as of 18:59, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_201539.1
Species:human
Chr:chr18
Start:12254165
End:12254170
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2983350,EH38E1901002)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF385402:149
MA620979:149
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000522713.5:191
  • ENST00000320477.10:191
  • NM_001279.4:191
  • NM_001318383.2:191
  • NR_134607.2:191
  • AK122762:191
  • AF041378:214
  • AY364639:214
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-194
Nearest PromoterID:NM_001318383
Entrez ID:1149
Nearest Unigene:Hs.249129
Nearest Refseq:NM_001279
Nearest Ensembl:ENSG00000176194
Gene Name:
Gene Alias:CIDE-A
Gene Type:protein-coding
CpG%:0.200000
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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