TSS: Rfhg 202885.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=DNase-H3K4me3 | |ccre_category=DNase-H3K4me3 | ||
| Line 15: | Line 16: | ||
|gene_description=synaptotagmin 4 | |gene_description=synaptotagmin 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_020783 | |nearest_promoter_id=NM_020783 | ||
|nearest_refseq=NM_020783 | |nearest_refseq=NM_020783 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.8059 | |nearest_unigene=Hs.8059 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 19:25, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | DNase-H3K4me3 (EH38D3001749,EH38E1912218) |
|---|---|
| Category: | DNase-H3K4me3 |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -90696 |
|---|---|
| Nearest PromoterID: | NM_020783 |
| Entrez ID: | 6860 |
| Nearest Unigene: | Hs.8059 |
| Nearest Refseq: | NM_020783 |
| Nearest Ensembl: | ENSG00000132872 |
| Gene Name: | |
| Gene Alias: | HsT1192 |
| Gene Type: | protein-coding |
| CpG%: | 0.066667 |
| GC%: | 0.375000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |