TSS: Rfhg 205123.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF384658:24 MA620235:24 ENST00000587001.6:28 ENST00000586317.2:37 BC000040:39 ENST00000590397.5:41 ENST00000585809.6:41 NM_024100.4:41 BC001648:44 CU674808:50 KJ906276:50 KJ899333:50 ENST00000591985.6:54 ENST00000251289.9:54 ENST00000607440.5:54 ENST00000591997.2:74
|annotation=promoter-TSS (NM_024100)
|annotation=promoter-TSS (NM_024100)
|ccre_category=PLS
|ccre_category=PLS
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|gene_description=WD repeat domain 18
|gene_description=WD repeat domain 18
|gene_id=
|gene_id=
|gene_name=WDR18
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_024100
|nearest_promoter_id=NM_024100
|nearest_refseq=NM_024100
|nearest_refseq=NM_024100
|nearest_transcripts=ENST00000587001.6:28 ENST00000586317.2:37 BC000040:39 ENST00000590397.5:41 ENST00000585809.6:41 NM_024100.4:41 BC001648:44 CU674808:50 KJ906276:50 KJ899333:50 ENST00000591985.6:54 ENST00000251289.9:54 ENST00000607440.5:54 ENST00000591997.2:74
|nearest_unigene=Hs.325321
|nearest_unigene=Hs.325321
|peak_score=1
|peak_score=1

Latest revision as of 20:08, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_205123.1
Species:human
Chr:chr19
Start:984294
End:984304
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3031333,EH38E1930661)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF384658:24
MA620235:24
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000587001.6:28
  • ENST00000586317.2:37
  • BC000040:39
  • ENST00000590397.5:41
  • ENST00000585809.6:41
  • NM_024100.4:41
  • BC001648:44
  • CU674808:50
  • KJ906276:50
  • KJ899333:50
  • ENST00000591985.6:54
  • ENST00000251289.9:54
  • ENST00000607440.5:54
  • ENST00000591997.2:74
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-29
Nearest PromoterID:NM_024100
Entrez ID:57418
Nearest Unigene:Hs.325321
Nearest Refseq:NM_024100
Nearest Ensembl:ENSG00000065268
Gene Name:
Gene Alias:Ipi3|R32184_1
Gene Type:protein-coding
CpG%:0.100000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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