TSS: Rfhg 205187.1: Difference between revisions

Latest revision as of 20:09, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_205187.1
Species:	human
Chr:	chr19

Start:	1094071
End:	1094097
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3031505,EH38E1930824)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF323072:104 MA558649:104
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1291
Nearest PromoterID:	NM_002695
Entrez ID:	5434
Nearest Unigene:	Hs.24301
Nearest Refseq:	NM_002695
Nearest Ensembl:	ENSG00000099817
Gene Name:
Gene Alias:	RPABC1\|RPB5\|XAP4\|hRPB25\|hsRPB5
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.518519
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF323072:104 MA558649:104
 |annotation=intron (NM_002695, intron 1 of 7)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=RNA polymerase II subunit E
 |gene_id=
-|gene_name=POLR2E
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002695
 |nearest_refseq=NM_002695
+|nearest_transcripts=
 |nearest_unigene=Hs.24301
 |peak_score=1