TSS: Rfhg 211098.1: Difference between revisions

Latest revision as of 22:00, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_211098.1
Species:	human
Chr:	chr19

Start:	35755084
End:	35755109
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D3058456,EH38E1951216)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF367392:311 MA602969:311
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1933
Nearest PromoterID:	NM_144617
Entrez ID:	126393
Nearest Unigene:	Hs.534538
Nearest Refseq:	NM_144617
Nearest Ensembl:	ENSG00000004776
Gene Name:
Gene Alias:	HEL55\|Hsp20\|PPP1R91
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.653846
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF367392:311 MA602969:311
 |annotation=TTS (NM_019104)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=heat shock protein family B (small) member 6
 |gene_id=
-|gene_name=HSPB6
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_144617
 |nearest_refseq=NM_144617
+|nearest_transcripts=
 |nearest_unigene=Hs.534538
 |peak_score=1