TSS: Rfhg 214074.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000559524.5:0 AK289950:0 BC069251:-23 ENST00000557833.1:-25 AB463870:34 ENST00000561293.5:-161 BC025404:-161 ENST00000441740.6:-188 ENST00000561204.5:316 ENST00000331559.9:-396 ENST00000607330.1:-396 ENST00000558555.6:-400 NM_020160.3:-400 NM_001301059.2:-400 NM_001009813.3:-400 AL359938:493 CR749687:493 | |||
|annotation=5' UTR (NM_001009813, exon 1 of 13) | |annotation=5' UTR (NM_001009813, exon 1 of 13) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 15: | Line 16: | ||
|gene_description=Meis homeobox 3 | |gene_description=Meis homeobox 3 | ||
|gene_id=56917 | |gene_id=56917 | ||
|gene_name= | |gene_name=Meis homeobox 3 | ||
|gene_source=HGNC:29537 | |gene_source=HGNC:29537 | ||
|gene_symbol=MEIS3 | |gene_symbol=MEIS3 | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001301059 | |nearest_promoter_id=NM_001301059 | ||
|nearest_refseq=NM_020160 | |nearest_refseq=NM_020160 | ||
|nearest_transcripts=BC069251:-23 ENST00000557833.1:-25 AB463870:34 ENST00000561293.5:-161 BC025404:-161 ENST00000441740.6:-188 ENST00000561204.5:316 ENST00000331559.9:-396 ENST00000607330.1:-396 ENST00000558555.6:-400 NM_020160.3:-400 NM_001301059.2:-400 NM_001009813.3:-400 AL359938:493 CR749687:493 | |||
|nearest_unigene=Hs.380923 | |nearest_unigene=Hs.380923 | ||
|peak_score=1 | |peak_score=1 | ||
Latest revision as of 22:58, 14 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS (EH38D3068366,EH38E1959240) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 405 |
|---|---|
| Nearest PromoterID: | NM_001301059 |
| Entrez ID: | 56917 |
| Nearest Unigene: | Hs.380923 |
| Nearest Refseq: | NM_020160 |
| Nearest Ensembl: | ENSG00000105419 |
| Gene Name: | Meis homeobox 3 |
| Gene Alias: | MRG2 |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.818182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "BC069251:-23 ENST00000557833.1:-25 AB463870:34 ENST00000561293.5:-161 BC025404:-161 ENST00000441740.6:-188 ENST00000561204.5:316 ENST00000331559.9:-396 ENST00000607330.1:-396 ENST00000558555.6:-400 NM_020160.3:-400 NM_001301059.2:-400 NM_001009813.3:-400 AL359938:493 CR749687:493" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.