TSS: Rfhg 218861.1: Difference between revisions

Latest revision as of 00:27, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_218861.1
Species:	human
Chr:	chr20

Start:	23635319
End:	23635363
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3288208,EH38E2104369)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF205944:-1 MA441521:-1
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF349996:11 MA585573:11 view more...

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2614
Nearest PromoterID:	NM_000099
Entrez ID:	1471
Nearest Unigene:	Hs.304682
Nearest Refseq:	NM_000099
Nearest Ensembl:	ENSG00000101439
Gene Name:
Gene Alias:	ARMD11\|HEL-S-2
Gene Type:	protein-coding
CpG%:	0.045455
GC%:	0.577778
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF205944:-1 MA441521:-1 LF349996:11 MA585573:11
 |annotation=exon (NM_000099, exon 2 of 3)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=cystatin C
 |gene_id=
-|gene_name=CST3
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_000099
 |nearest_refseq=NM_000099
+|nearest_transcripts=LF349996:11 MA585573:11
 |nearest_unigene=Hs.304682
 |peak_score=1