TSS: Rfhg 229631.1: Difference between revisions

Latest revision as of 03:37, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_229631.1
Species:	human
Chr:	chr22

Start:	35961589
End:	35961619
Strand:	-

Source datasets

PRJNA548673

Protocol

ReCappable-seq

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D3368322,EH38E2161355)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001349996.2:-11 NM_001349991.2:-11 NM_001349989.2:-11 NM_001349992.2:-11 NM_001349982.2:-11 NM_001349990.2:-11 NM_001349994.2:-11 NM_001349995.2:-11
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000408983.2:-47

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	26
Nearest PromoterID:	NM_001349982
Entrez ID:	23543
Nearest Unigene:	Hs.282998
Nearest Refseq:	NM_014309
Nearest Ensembl:	ENSG00000100320
Gene Name:
Gene Alias:	FOX2\|Fox-2\|HNRBP2\|HRNBP2\|RBM9\|RTA\|dJ106I20.3\|fxh
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.419355
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001349996.2:-11 NM_001349991.2:-11 NM_001349989.2:-11 NM_001349992.2:-11 NM_001349982.2:-11 NM_001349990.2:-11 NM_001349994.2:-11 NM_001349995.2:-11 ENST00000408983.2:-47
 |annotation=promoter-TSS (NM_001349989)
 |ccre_category=dELS
@@ Line 15: / Line 16: @@
 |gene_description=RNA binding fox-1 homolog 2
 |gene_id=
-|gene_name=RBFOX2
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001349982
 |nearest_refseq=NM_014309
+|nearest_transcripts=ENST00000408983.2:-47
 |nearest_unigene=Hs.282998
 |peak_score=1