TSS: Rfhg 238653.1: Difference between revisions

Latest revision as of 06:18, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_238653.1
Species:	human
Chr:	chrX

Start:	118728226
End:	118728256
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4306192,EH38E2765909)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	635
Nearest PromoterID:	NM_001560
Entrez ID:	3597
Nearest Unigene:	Hs.496646
Nearest Refseq:	NM_001560
Nearest Ensembl:	ENSG00000131724
Gene Name:
Gene Alias:	CD213A1\|CT19\|IL-13Ra\|NR4
Gene Type:	protein-coding
CpG%:	0.033333
GC%:	0.516129
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001560, intron 1 of 10)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=interleukin 13 receptor subunit alpha 1
 |gene_id=
-|gene_name=IL13RA1
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001560
 |nearest_refseq=NM_001560
+|nearest_transcripts=
 |nearest_unigene=Hs.496646
 |peak_score=1