TSS: Rfhg 3684.1: Difference between revisions

Latest revision as of 10:57, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_3684.1
Species:	human
Chr:	chr1

Start:	26046684
End:	26046694
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2141525,EH38E1330163)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF211962:80 MA447539:80
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-571
Nearest PromoterID:	NM_032513
Entrez ID:	7780
Nearest Unigene:	Hs.143545
Nearest Refseq:	NM_032513
Nearest Ensembl:	ENSG00000158014
Gene Name:
Gene Alias:	PP12488\|TNZD\|ZNT2\|ZnT-2
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF211962:80 MA447539:80
 |annotation=promoter-TSS (NM_001004434)
 |ccre_category=pELS
@@ Line 15: / Line 16: @@
 |gene_description=solute carrier family 30 member 2
 |gene_id=
-|gene_name=SLC30A2
+|gene_name=
 |gene_source=
 |gene_symbol=
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_032513
 |nearest_refseq=NM_032513
+|nearest_transcripts=
 |nearest_unigene=Hs.143545
 |peak_score=1