TSS: Rfhg 37723.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=LF317869:22 MA553446:22 LF317868:-68 MA553445:-68 LF317870:130 MA553447:130 ENST00000357118.8:161 BC143238:161 BC101525:161 BC104770:161 BC143237:161 BC117413:161 BC143608:161 ENST00000272849.7:192 ENST00000412873.2:192 KJ901917:192 AF280546:192 AF280544:192 AF280545:192 AB385128:192 KJ534899:192 KJ534900:192 HQ258666:192 KJ892631:192 AF016098:192 AF022859:192 AF022860:192 ENST00000478013.1:-384 AK290934:-407
|annotation=5' UTR (NM_201267, exon 1 of 16)
|annotation=5' UTR (NM_201267, exon 1 of 16)
|ccre_category=pELS
|ccre_category=pELS
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|gene_description=neuropilin 2
|gene_description=neuropilin 2
|gene_id=
|gene_id=
|gene_name=NRP2
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
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|nearest_promoter_id=NM_018534
|nearest_promoter_id=NM_018534
|nearest_refseq=NM_003872
|nearest_refseq=NM_003872
|nearest_transcripts=LF317868:-68 MA553445:-68 LF317870:130 MA553447:130 ENST00000357118.8:161 BC143238:161 BC101525:161 BC104770:161 BC143237:161 BC117413:161 BC143608:161 ENST00000272849.7:192 ENST00000412873.2:192 KJ901917:192 AF280546:192 AF280544:192 AF280545:192 AB385128:192 KJ534899:192 KJ534900:192 HQ258666:192 KJ892631:192 AF016098:192 AF022859:192 AF022860:192 ENST00000478013.1:-384 AK290934:-407
|nearest_unigene=Hs.471200
|nearest_unigene=Hs.471200
|peak_score=1
|peak_score=1

Latest revision as of 11:15, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_37723.1
Species:human
Chr:chr2
Start:205683042
End:205683099
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS,CTCF-bound (EH38D3235233,EH38E2068517)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LF317869:22
MA553446:22
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF317868:-68
  • MA553445:-68
  • LF317870:130
  • MA553447:130
  • ENST00000357118.8:161
  • BC143238:161
  • BC101525:161
  • BC104770:161
  • BC143237:161
  • BC117413:161
  • BC143608:161
  • ENST00000272849.7:192
  • ENST00000412873.2:192
  • KJ901917:192
  • AF280546:192
  • AF280544:192
  • AF280545:192
  • AB385128:192
  • KJ534899:192
  • KJ534900:192
  • HQ258666:192
  • KJ892631:192
  • AF016098:192
  • AF022859:192
  • AF022860:192
  • ENST00000478013.1:-384
  • AK290934:-407
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:569
Nearest PromoterID:NM_018534
Entrez ID:8828
Nearest Unigene:Hs.471200
Nearest Refseq:NM_003872
Nearest Ensembl:ENSG00000118257
Gene Name:
Gene Alias:NP2|NPN2|PRO2714|VEGF165R2
Gene Type:protein-coding
CpG%:0.035088
GC%:0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "LF317868:-68 MA553445:-68 LF317870:130 MA553447:130 ENST00000357118.8:161 BC143238:161 BC101525:161 BC104770:161 BC143237:161 BC117413:161 BC143608:161 ENST00000272849.7:192 ENST00000412873.2:192 KJ901917:192 AF280546:192 AF280544:192 AF280545:192 AB385128:192 KJ534899:192 KJ534900:192 HQ258666:192 KJ892631:192 AF016098:192 AF022859:192 AF022860:192 ENST00000478013.1:-384 AK290934:-407" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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