TSS: Rfhg 39338.1: Difference between revisions

Latest revision as of 11:46, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_39338.1
Species:	human
Chr:	chr2

Start:	219496129
End:	219496133
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000651166.2:0
GeneID:	100996693
HGNC/MGI_ID:	HGNC:51251
UniProt_ID:	A0A087WV53
Nearer transcript ids and distances:	ENST00000617028.1:222

Gene_name:	SPEG neighbor
Gene_symbol:	SPEGNB
Gene_synonyms:
Gene_source:	HGNC:51251

TATA-Box annotation

Distance to TSS:	-224
Nearest PromoterID:	NM_001286811
Entrez ID:	100996693
Nearest Unigene:	Hs.21639
Nearest Refseq:	NM_001286811
Nearest Ensembl:	ENSG00000286095
Gene Name:	SPEG neighbor
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000651166.2:0 NM_001286811.2:0 ENST00000617028.1:222
 |annotation=promoter-TSS (NM_001286811)
 |ccre_category=N
@@ Line 15: / Line 16: @@
 |gene_description=SPEG neighbor
 |gene_id=100996693
-|gene_name=SPEGNB
+|gene_name=SPEG neighbor
 |gene_source=HGNC:51251
 |gene_symbol=SPEGNB
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001286811
 |nearest_refseq=NM_001286811
+|nearest_transcripts=ENST00000617028.1:222
 |nearest_unigene=Hs.21639
 |peak_score=1